scRNA-seq Data Analysis Workshop
Small cells, big stories — let’s decode them together.
- When
14–15 Nov 2026
- المكان
- Online
- Seats
- 24 left
- Certificate
- Provided to all participants
Registration closes
00:00:00
Program coverage
- Day 1 · 14 Nov 2026
Reads to counts, then clean cells
FASTQ to count matrix with STARsolo, on the public 10x PBMC 5k dataset (GRCh38 primary assembly, GENCODE v50) · Read QC with FastQC, fastp and MultiQC · Ambient RNA and doublet removal with SoupX and scDblFinder · Normalisation and feature selection in scanpy and Seurat
- Day 2 · 15 Nov 2026
Cells to biology, in R and Python
PCA, UMAP and Leiden clustering · Batch integration with Harmony across donors · Cell-type annotation with SingleR and CellTypist, checked against marker genes · Differential expression by Wilcoxon and pseudobulk to DESeq2 · Where this goes next: trajectory, RNA velocity and cell–cell signalling
What you take away
- Hands-on with the real pipeline: FASTQ to annotated cells, no toy steps skipped
- Both languages used in practice — R (Seurat) and Python (scanpy) on the same dataset
- Practical knowledge for research and industry applications
- Certificate provided to all participants
Schedule
- Day 1 · Sat, 14 Nov
- Day 2 · Sun, 15 NovIncludes queries and discussion
Payment details
| Category | Amount |
|---|---|
| Students including PhD Scholars | ₹1,299including GST |
| Others | ₹2,499including GST |
* incl. GST
Course Coordinators and Host
Host & Co-host
- HostAnOmics LabComputational Biology & Bioinformatics
AnOmics Lab is a specialised computational biology and bioinformatics platform dedicated to accelerating research in genomics, structural biology, and drug discovery, from raw sequencing data to reproducible, publication-ready insights.
Websitewww.anomicslab.com - Co-hostTheBiomicsRevolutionising Life Sciences
The Biomics is an educational library site for Life Sciences, Biotechnology or related to Biology, providing a comprehensive knowledge to those students who are deeply involved in CSIR-NET and other JRF and PhD exam preparations.
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FAQ
Do I need my own data?
No. The workshop runs on public demonstration datasets, so you can follow every step on your own machine.
Is the fee inclusive of GST?
Yes. The registration fee is Rs. 1,299 for students (up to PhD) and Rs. 2,499 for everyone else, inclusive of 18% GST. A tax invoice with our GSTIN is issued for every registration.
Do I get a certificate?
Yes. A certificate is provided to all participants, with a verification QR that resolves to this event page.